Far infrared spectra of solid state aliphatic amino acids in different protonation states.

Aurélien Trivella (1) , Thomas Gaillard (1, 2) , Roland Stote (1, 3) , Petra Hellwig (1)

1 Institut de Chimie de Strasbourg
2 BIOC - Laboratoire de Biochimie de l'Ecole polytechnique
3 IGBMC - Institut de Génétique et de Biologie Moléculaire et Cellulaire

Far infrared spectra of zwitterionic, cationic, and anionic forms of aliphatic amino acids in solid state have been studied experimentally. Measurements were done on glycine, L-alanine, L-valine, L-leucine, and L-isoleucine powder samples and film samples obtained from dried solutions prepared at pH ranging from 1 to 13. Solid state density functional theory calculations were also performed, and detailed potential energy distributions were obtained from normal mode results. A good correspondence between experimental and simulated spectra was achieved and this allowed us to propose an almost complete band assignment for the far infrared spectra of zwitterionic forms. In the 700-50 cm(-1) range, three regions were identified, each corresponding to a characteristic set of normal modes. A first region between 700 and 450 cm(-1) mainly contained the carboxylate bending, rocking, and wagging modes as well as the ammonium torsional mode. The 450-250 cm(-1) region was representative of backbone and sidechain skeletal bending modes. At last, the low wavenumber zone, below 250 cm(-1), was characteristic of carboxylate and skeletal torsional modes and of lattice modes. Assignments are also proposed for glycine cationic and anionic forms, but could not be obtained for all aliphatic amino acids due to the lack of structural data. This work is intended to provide fundamental information for the understanding of peptides vibrational properties.

Domaines: Biochimie, Biologie Moléculaire

Aurélien Trivella, Thomas Gaillard, Roland Stote, Petra Hellwig. Far infrared spectra of solid state aliphatic amino acids in different protonation states.. Journal of Chemical Physics, 2010, 132 (11), pp.115105. ⟨10.1063/1.3356027⟩. ⟨hal-00765891⟩