A. Maule, V. Leh, and C. Lederer, The dialogue between viruses and hosts in compatible interactions, Current Opinion in Plant Biology, vol.5, issue.4, pp.279-284, 2002.
DOI : 10.1016/S1369-5266(02)00272-8

S. Whitham, S. Quan, H. Chang, B. Cooper, B. Estes et al., plants, The Plant Journal, vol.13, issue.2, pp.271-283, 2003.
DOI : 10.1046/j.1365-313X.2003.01625.x

S. Whitham, C. Yang, and M. Goodin, Global Impact: Elucidating Plant Responses to Viral Infection, Molecular Plant-Microbe Interactions, vol.19, issue.11, pp.1207-1215, 2006.
DOI : 10.1094/MPMI-19-1207

T. Ishihara, N. Sakurai, K. Sekine, S. Hase, M. Ikegami et al., Comparative Analysis of Expressed Sequence Tags in Resistant and Susceptible Ecotypes of Arabidopsis thaliana Infected with Cucumber Mosaic Virus, Plant and Cell Physiology, vol.45, issue.4, pp.470-480, 2004.
DOI : 10.1093/pcp/pch057

R. Marathe, Z. Guan, R. Anandalakshmi, H. Zhao, and S. Dinesh-kumar, Study of Arabidopsis thalianaresistome in response to cucumber mosaic virus infection using whole genome microarray, Plant Molecular Biology, vol.6, issue.4, pp.501-520, 2004.
DOI : 10.1007/s11103-004-0439-0

C. Yang, R. Guo, F. Jie, D. Nettleton, J. Peng et al., Infection, Molecular Plant-Microbe Interactions, vol.20, issue.4, pp.358-370, 2007.
DOI : 10.1094/MPMI-20-4-0358
URL : https://hal.archives-ouvertes.fr/pasteur-00823211

S. Urcuqui-inchima, A. Haenni, and F. Bernardi, Potyvirus proteins: a wealth of functions, Virus Research, vol.74, issue.1-2, pp.157-175, 2001.
DOI : 10.1016/S0168-1702(01)00220-9

M. Adams, J. Antoniw, and F. Beaudoin, Overview and analysis of the polyprotein cleavage sites in the family Potyviridae, Molecular Plant Pathology, vol.77, issue.4, pp.471-487, 2005.
DOI : 10.1111/j.1742-4658.2004.04493.x

D. Shukla, C. Ward, and A. Brunt, The Potyviridae Wallingford, CAB International, 1994.

S. Chisholm, S. Mahajan, S. Whitham, M. Yamamoto, and J. Carrington, Cloning of the Arabidopsis RTM1 gene, which controls restriction of long-distance movement of tobacco etch virus, Proceedings of the National Academy of Sciences, vol.97, issue.1, pp.489-494, 2000.
DOI : 10.1073/pnas.97.1.489

S. Chisholm, M. Parra, R. Anderberg, and J. Carrington, Arabidopsis RTM1 and RTM2 Genes Function in Phloem to Restrict Long-Distance Movement of Tobacco Etch Virus, PLANT PHYSIOLOGY, vol.127, issue.4, pp.1667-1675, 2001.
DOI : 10.1104/pp.010479

V. Tusher, R. Tibshirani, and G. Chu, Significance analysis of microarrays applied to the ionizing radiation response, Proceedings of the National Academy of Sciences, vol.98, issue.9, pp.5116-5121, 2001.
DOI : 10.1073/pnas.091062498

F. Al-shahrour, R. Díaz-uriarte, and J. Dopazo, Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information, Bioinformatics, vol.21, issue.13, pp.2988-2993, 2005.
DOI : 10.1093/bioinformatics/bti457

N. Koizumi, Isolation and Responses to Stress of a Gene That Encodes a Luminal Binding Protein in Arabidopsis thaliana, Plant and Cell Physiology, vol.37, issue.6, pp.862-865, 1996.
DOI : 10.1093/oxfordjournals.pcp.a029023

L. Gusta, R. Trischuk, and C. Weiser, Plant Cold Acclimation: The Role of Abscisic Acid, Journal of Plant Growth Regulation, vol.49, issue.(suppl), pp.308-318, 2005.
DOI : 10.1007/s00344-005-0079-x

R. Rakwal and S. Komatsu, Abscisic acid promoted changes in the protein profiles of rice seedling by proteome analysis, Molecular Biology Reports, vol.30, issue.4, pp.217-230, 2005.
DOI : 10.1007/s11033-005-2710-0

D. Dixon, A. Lapthorn, and R. Edwards, Plant glutathione transferases, Genome Biol, vol.3, p.3004, 2002.

X. Daniel, C. Lacomme, J. Morel, and D. Roby, A novel myb oncogene homologue in Arabidopsis thaliana related to hypersensitive cell death, The Plant Journal, vol.10, issue.1, pp.57-66, 1999.
DOI : 10.1073/pnas.93.25.14972

R. Stracke, M. Werber, and B. Weisshaar, The R2R3-MYB gene family in Arabidopsis thaliana, Current Opinion in Plant Biology, vol.4, issue.5, pp.447-456, 2001.
DOI : 10.1016/S1369-5266(00)00199-0

M. Wiermer, B. Feys, and J. Parker, Plant immunity: the EDS1 regulatory node, Current Opinion in Plant Biology, vol.8, issue.4, pp.383-389, 2005.
DOI : 10.1016/j.pbi.2005.05.010

J. Glazebrook, Genes controlling expression of defense responses in Arabidopsis, Current Opinion in Plant Biology, vol.2, issue.4, pp.280-286, 1999.
DOI : 10.1016/S1369-5266(99)80050-8

M. Wildermuth, J. Dewdney, G. Wu, and F. Ausubel, Isochorismate synthase is required to synthesize salicylic acid for plant defence, Nature, vol.414, issue.6863, pp.562-565, 2001.
DOI : 10.1038/35107108

Z. Chen, J. Tan, M. Ingouff, V. Sundaresan, and F. Berger, Chromatin assembly factor 1 regulates the cell cycle but not cell fate during male gametogenesis in Arabidopsis thaliana, Development, vol.135, issue.1, pp.65-73, 2008.
DOI : 10.1242/dev.010108

S. Sue, H. Hsiao, B. Chung, Y. Cheng, K. Hsueh et al., Solution Structure of the Arabidopsis thaliana Telomeric Repeat-binding Protein DNA Binding Domain: A New Fold with an Additional C-terminal Helix, Journal of Molecular Biology, vol.356, issue.1, pp.72-85, 2006.
DOI : 10.1016/j.jmb.2005.11.009

V. Kirik and H. Bäumlein, A novel leaf-specific myb-related protein with a single binding repeat, Gene, vol.183, issue.1-2, pp.109-113, 1996.
DOI : 10.1016/S0378-1119(96)00521-5

T. Hirayama and K. Shinozaki, Perception and transduction of abscisic acid signals: keys to the function of the versatile plant hormone ABA, Trends in Plant Science, vol.12, issue.8, pp.343-351, 2007.
DOI : 10.1016/j.tplants.2007.06.013

M. Mandel, K. Feldmann, L. Herrera-estrella, M. Rocha-sosa, and P. León, CLA1, a novel gene required for chloroplast development, is highly conserved in evolution, The Plant Journal, vol.9, issue.5, pp.649-658, 1996.
DOI : 10.1046/j.1365-313X.1996.9050649.x

M. Tamoi, M. Nagaoka, Y. Miyagawa, and S. Shigeoka, Contribution of Fructose-1,6-bisphosphatase and Sedoheptulose-1,7-bisphosphatase to the Photosynthetic Rate and Carbon Flow in the Calvin Cycle in Transgenic Plants, Plant and Cell Physiology, vol.47, issue.3, pp.380-390, 2006.
DOI : 10.1093/pcp/pcj004

F. Vailleau, X. Daniel, M. Tronchet, J. Montillet, C. Triantaphylidès et al., A R2R3-MYB gene, AtMYB30, acts as a positive regulator of the hypersensitive cell death program in plants in response to pathogen attack, Proceedings of the National Academy of Sciences, vol.99, issue.15, pp.10179-10184, 2002.
DOI : 10.1073/pnas.152047199

H. Jockusch, C. Wiegand, B. Mersch, and D. Rajes, with Temperature-Sensitive Coat Proteins Induce Heat Shock Response in Tobacco Leaves, Molecular Plant-Microbe Interactions, vol.14, issue.7, pp.914-917, 2001.
DOI : 10.1094/MPMI.2001.14.7.914

M. Aranda, M. Escaler, D. Wang, and A. Maule, Induction of HSP70 and polyubiquitin expression associated with plant virus replication, Proceedings of the National Academy of Sciences, vol.93, issue.26, pp.15289-15293, 1996.
DOI : 10.1073/pnas.93.26.15289

M. Mayer, Recruitment of Hsp70 chaperones: a crucial part of viral survival strategies, Rev Physiol Biochem Pharmacol, vol.80, pp.1-46, 2005.
DOI : 10.1007/s10254-004-0025-5

S. Elena, C. Carrasco, J. Daròs, and R. Sanjuán, Mechanisms of genetic robustness in RNA viruses, EMBO reports, vol.73, issue.2, pp.168-173, 2006.
DOI : 10.1128/JVI.74.20.9546-9552.2000

B. Mauch-mani and F. Much, The role of abscisic acid in plant???pathogen interactions, Current Opinion in Plant Biology, vol.8, issue.4, pp.409-414, 2005.
DOI : 10.1016/j.pbi.2005.05.015

D. Kasschau, Z. Xie, E. Allen, C. Llave, E. Chapman et al., P1/HC-Pro, a Viral Suppressor of RNA Silencing, Interferes with Arabidopsis Development and miRNA Function, Developmental Cell, vol.4, issue.2, pp.205-217, 2003.
DOI : 10.1016/S1534-5807(03)00025-X

P. Carrasco, J. Daròs, P. Agudelo-romero, and S. Elena, A real-time RT-PCR assay for quantifying the fitness of tobacco etch virus in competition experiments, Journal of Virological Methods, vol.139, issue.2, pp.181-188, 2007.
DOI : 10.1016/j.jviromet.2006.09.020

E. Bueso, A. S. Carbonell, P. Pérez-amador, M. Fayos, J. Bellés et al., mutant reveals a cross-talk between oxidative stress and ethylene, The Plant Journal, vol.29, issue.6, pp.1052-1065, 2007.
DOI : 10.1111/j.1365-313X.2007.03305.x

Y. Yang, S. Dudoit, P. Luu, D. Lin, V. Peng et al., Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation, Nucleic Acids Research, vol.30, issue.4, p.15, 2002.
DOI : 10.1093/nar/30.4.e15

M. Kanehisa, M. Araki, S. Goto, M. Hattori, M. Hirakawa et al., KEGG for linking genomes to life and the environment, Nucleic Acids Research, vol.36, issue.Database, pp.480-484, 2008.
DOI : 10.1093/nar/gkm882