Glotaran: A Java-based graphical user interface for the R package TIMP

Joris Snellenburg 1 Sergey Laptenok 2, * Ralf Seger 3 Katharine Mullen 4 Ivo van Stokkum 1
* Corresponding author
1 Department of Physics and Astronomy
2 LOB - Laboratoire d'optique et biosciences
3 Department of Computer Oriented Statistics and Data Analysis (COSADA)
4 Structure Determination Methods Group
Abstract : In this work the software application called Glotaran is introduced as a Java-based graphical user interface to the R package TIMP, a problem solving environment for fitting superposition models to multi-dimensional data. TIMP uses a command-line user interface for the interaction with data, the specification of models and viewing of analysis results. Instead, Glotaran provides a graphical user interface which features interactive and dynamic data inspection, easier -- assisted by the user interface -- model specification and interactive viewing of results. The interactivity component is especially helpful when working with large, multi-dimensional datasets as often result from time-resolved spectroscopy measurements, allowing the user to easily pre-select and manipulate data before analysis and to quickly zoom in to regions of interest in the analysis results. Glotaran has been developed on top of the NetBeans rich client platform and communicates with R through the Java-to-R interface Rserve. The background and the functionality of the application are described here. In addition, the design, development and implementation process of Glotaran is documented in a generic way.
Document type :
Journal articles
Complete list of metadatas

Cited literature [22 references]  Display  Hide  Download
https://hal-polytechnique.archives-ouvertes.fr/hal-00817159
Contributor : Denis Roura <>
Submitted on : Wednesday, November 20, 2013 - 12:46:26 PM
Last modification on : Thursday, February 7, 2019 - 5:19:19 PM
Long-term archiving on : Friday, February 21, 2014 - 2:50:24 AM

File

v49i03.pdf
Explicit agreement for this submission

Identifiers

  • HAL Id : hal-00817159, version 1

Collections

X-LOB | X | PARISTECH | X-DEP-BIO

Citation

Joris Snellenburg, Sergey Laptenok, Ralf Seger, Katharine Mullen, Ivo van Stokkum. Glotaran: A Java-based graphical user interface for the R package TIMP. Journal of Statistical Software, University of California, Los Angeles, 2012, 49 (3). ⟨hal-00817159⟩

Export

BibTeX TEI DC DCterms EndNote

Share

Metrics

Record views

1352

Files downloads

1440

Contact

support.ccsd.cnrs.fr
hal.support@ccsd.cnrs.fr
Logo CCSD