X. Wu, J. Li, C. Hsieh, P. Burgers, and M. Lieber, Processing of branched DNA intermediates by a complex of human FEN-1 and PCNA, Nucleic Acids Research, vol.24, issue.11, pp.2036-2043, 1996.
DOI : 10.1093/nar/24.11.2036

D. Hosfield, C. Mol, B. Shen, and J. Tainer, Structure of the DNA Repair and Replication Endonuclease and Exonuclease FEN-1, Cell, vol.95, issue.1, pp.135-146, 1998.
DOI : 10.1016/S0092-8674(00)81789-4

M. Newman, J. Murray-rust, J. Lally, R. J. Fadden, and A. , Structure of an XPF endonuclease with and without DNA suggests a model for substrate recognition, The EMBO Journal, vol.14, issue.5, pp.895-905, 2005.
DOI : 10.1107/S0907444900014736

A. Facista, H. Nguyen, C. Lewis, A. Prasad, and L. Ramsey, Deficient expression of DNA repair enzymes in early progression to sporadic colon cancer, Genome Integrity, vol.3, issue.1, p.3, 2012.
DOI : 10.1038/nrc3063

P. Munoz, R. Blanco, J. Flores, and M. Blasco, XPF nuclease-dependent telomere loss and increased DNA damage in mice overexpressing TRF2 result in premature aging and cancer, Nature Genetics, vol.16, issue.10, pp.1063-1071, 2005.
DOI : 10.1038/sj.embor.7400127

J. Roberts and M. White, An Archaeal Endonuclease Displays Key Properties of Both Eukaryal XPF-ERCC1 and Mus81, Journal of Biological Chemistry, vol.280, issue.7, pp.5924-5928, 2005.
DOI : 10.1074/jbc.M412766200

B. Ren, J. Kuhn, L. Meslet-cladiere, J. Briffotaux, and C. Norais, Structure and function of a novel endonuclease acting on branched DNA substrates, The EMBO Journal, vol.28, issue.16, pp.2479-2489, 2009.
DOI : 10.1073/pnas.0504341102
URL : https://hal.archives-ouvertes.fr/hal-00406013

G. Moldovan, B. Pfander, and S. Jentsch, PCNA, the Maestro of the Replication Fork, Cell, vol.129, issue.4, pp.665-679, 2007.
DOI : 10.1016/j.cell.2007.05.003

K. Shivji, M. Kenny, and R. Wood, Proliferating cell nuclear antigen is required for DNA excision repair, Cell, vol.69, issue.2, pp.367-374, 1992.
DOI : 10.1016/0092-8674(92)90416-A

A. Van-oijen, Single-molecule approaches to characterizing kinetics of biomolecular interactions, Current Opinion in Biotechnology, vol.22, issue.1, pp.1-6, 2010.
DOI : 10.1016/j.copbio.2010.10.002

Y. Harada, T. Funatsu, K. Murakami, Y. Nonoyama, and A. Ishihama, Single-Molecule Imaging of RNA Polymerase-DNA Interactions in Real Time, Biophysical Journal, vol.76, issue.2, pp.709-715, 1999.
DOI : 10.1016/S0006-3495(99)77237-1

U. Kubitscheck, O. Kückmann, T. Kues, and R. Peters, Imaging and Tracking of Single GFP Molecules in Solution, Biophysical Journal, vol.78, issue.4, pp.2170-2179, 2000.
DOI : 10.1016/S0006-3495(00)76764-6

J. Macklin, J. Trautman, T. Harris, and L. Brusk, Imaging and Time-Resolved Spectroscopy of Single Molecules at an Interface, Science, vol.272, issue.5259, pp.255-258, 1996.
DOI : 10.1126/science.272.5259.255

T. Ha, A. Ting, J. Liang, W. Caldwell, and A. Deniz, Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism, Proceedings of the National Academy of Sciences, vol.96, issue.3, pp.893-898, 1999.
DOI : 10.1073/pnas.96.3.893

R. Iizuka, T. Ueno, N. Morone, and T. Funatsu, Single-Molecule Fluorescence Polarization Study of Conformational Change in Archaeal Group II Chaperonin, PLoS ONE, vol.388, issue.7, pp.1-8, 2011.
DOI : 10.1371/journal.pone.0022253.s004

Y. Wang, R. Austin, and E. Cox, Single Molecule Measurements of Repressor Protein 1D Diffusion on DNA, Physical Review Letters, vol.97, issue.4, p.48302, 2006.
DOI : 10.1103/PhysRevLett.97.048302

I. Bonnet, A. Biebricher, P. Porte, C. Loverdo, and O. Bénichou, Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA, Nucleic Acids Research, vol.36, issue.12, pp.4118-4127, 2008.
DOI : 10.1093/nar/gkn376

S. Kuznetsova, G. Zauner, T. Aartsma, H. Engelkamp, and N. Hatzakis, The enzyme mechanism of nitrite reductase studied at single-molecule level, Proceedings of the National Academy of Sciences, vol.105, issue.9, pp.3250-3255, 2008.
DOI : 10.1073/pnas.0707736105

S. Xie, Single-Molecule Approach to Enzymology, Single Molecules, vol.390, issue.4, pp.229-236, 2001.
DOI : 10.1002/1438-5171(200112)2:4<229::AID-SIMO229>3.0.CO;2-9

P. Blainey, A. Van-oijen, A. Banerjee, G. Verdine, and S. Xie, A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA, Proceedings of the National Academy of Sciences, vol.103, issue.15, pp.5752-5757, 2006.
DOI : 10.1073/pnas.0509723103

G. Segers-nolten, C. Wyman, N. Wijgers, W. Vermeulen, and A. Lenferink, Scanning confocal fluorescence microscopy for single molecule analysis of nucleotide excision repair complexes, Nucleic Acids Research, vol.30, issue.21, pp.4720-4727, 2002.
DOI : 10.1093/nar/gkf599

E. Heldwein and R. Brennan, Processive translocation and DNA unwinding by individual RecBCD enzyme molecules, Nature, vol.409, pp.374-378, 2001.

H. Lu, L. Iakoucheva, and E. Ackerman, Single-Molecule Conformational Dynamics of Fluctuating Noncovalent DNA???Protein Interactions in DNA Damage Recognition, Journal of the American Chemical Society, vol.123, issue.37, pp.9184-9185, 2001.
DOI : 10.1021/ja0058942

A. Van-oijen, P. Blainey, D. Crampton, C. Richardson, and T. Ellenberger, Single-Molecule Kinetics of ?? Exonuclease Reveal Base Dependence and Dynamic Disorder, Science, vol.301, issue.5637, pp.1235-1238, 2003.
DOI : 10.1126/science.1084387

R. Roy, A. Kozlov, T. Lohman, and T. Ha, SSB protein diffusion on single-stranded DNA stimulates RecA filament formation, Nature, vol.3, issue.7267, pp.1092-1097, 2009.
DOI : 10.1038/nature08442

W. Zhang, X. Lü, W. Zhang, and J. Shen, Single-Stranded DNA-Binding Protein and Single-Stranded DNA, Langmuir, vol.27, issue.24, pp.15008-15015, 2011.
DOI : 10.1021/la203752y

R. Zhou, A. Kozlov, R. Roy, J. Zhang, and S. Korolev, SSB Functions as a Sliding Platform that Migrates on DNA via Reptation, Cell, vol.146, issue.2, pp.222-232, 2011.
DOI : 10.1016/j.cell.2011.06.036

G. Lia, B. Michel, and J. Allemand, Polymerase Exchange During Okazaki Fragment Synthesis Observed in Living Cells, Science, vol.335, issue.6066, pp.328-331, 2012.
DOI : 10.1126/science.1210400

M. Sobhy, L. Joudeh, X. Huang, M. Takahashi, and S. Hamdan, Sequential and Multistep Substrate Interrogation Provides the Scaffold for Specificity in Human Flap Endonuclease 1, Cell Reports, vol.3, issue.6, pp.1785-1794, 2013.
DOI : 10.1016/j.celrep.2013.05.001

T. Craggs, R. Hutton, A. Brenlla, M. White, and J. Penedo, Singlemolecule characterization of Fen1 and Fen1/PCNA complexes acting on flap substrates, Nucleic Acids Res Epub ahead of print, 2013.

G. Senavirathne, M. Jaszczur, P. Auerbach, T. Upton, and L. Chelico, Single-stranded DNA Scanning and Deamination by APOBEC3G Cytidine Deaminase at Single Molecule Resolution, Journal of Biological Chemistry, vol.287, issue.19, pp.15826-15835, 2012.
DOI : 10.1074/jbc.M112.342790

S. Myong, I. Rasnik, C. Joo, T. Lohman, and T. Ha, Repetitive shuttling of a motor protein on DNA, Nature, vol.253, issue.7063, pp.1321-1325, 2005.
DOI : 10.1016/S1097-2765(03)00188-6

C. Creze, A. Ligabue, S. Laurent, R. Lestini, and S. Laptenok, Modulation of the Pyrococcus abyssi NucS Endonuclease Activity by Replication Clamp at Functional and Structural Levels, Journal of Biological Chemistry, vol.287, issue.19, pp.15648-15660, 2012.
DOI : 10.1074/jbc.M112.346361
URL : https://hal.archives-ouvertes.fr/hal-00324355

J. Gloor, L. Balakrishnan, and R. Bambara, Flap Endonuclease 1 Mechanism Analysis Indicates Flap Base Binding Prior to Threading, Journal of Biological Chemistry, vol.285, issue.45, 2010.
DOI : 10.1074/jbc.M110.165902

P. Schurtenberger, S. Egelhaaf, R. Hindges, G. Maga, and Z. Jonsson, The solution structure of functionally active human proliferating cell nuclear antigen determined by small-angle neutron scattering, Journal of Molecular Biology, vol.275, issue.1, pp.123-132, 1998.
DOI : 10.1006/jmbi.1997.1435

R. Thompson, R. Daniel, and W. Webb, Precise Nanometer Localization Analysis for Individual Fluorescent Probes, Biophysical Journal, vol.82, issue.5, pp.2775-2783, 2002.
DOI : 10.1016/S0006-3495(02)75618-X
URL : http://doi.org/10.1016/s0006-3495(02)75618-x

C. Aitken, R. Marshall, and J. Puglisi, An Oxygen Scavenging System for Improvement of Dye Stability in Single-Molecule Fluorescence Experiments, Biophysical Journal, vol.94, issue.5, pp.1826-1835, 2008.
DOI : 10.1529/biophysj.107.117689