Statistical mechanics of complex networks, Reviews of modern Physics, vol.74, pp.47-97, 2002. ,
Using generalized ensemble simulations and Markov state models to identify conformational states, Methods, vol.49, issue.2, pp.197-201, 2009. ,
Protein folded states are kinetic hubs, Proc. Natl. Acad. Sci. U.S.A, vol.107, issue.24, pp.10890-10895, 2010. ,
Asymptotic connectivity for the network of RNA secondary structures, 2015. ,
Expected degree for RNA secondary structure networks, J Comp Chem, vol.36, issue.2, pp.103-120, 2015. ,
Network Properties of the Ensemble of RNA Structures, PLoS. One, vol.10, issue.10, p.139476, 2015. ,
Small-world graphs: characterization and alternative constructions, Adv. in Appl. Probab, vol.40, issue.4, pp.939-965, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00354849
Singularity analysis of generating functions, SIAM Journal of Discrete Mathematics, vol.3, pp.216-240, 1990. ,
URL : https://hal.archives-ouvertes.fr/inria-00075725
Analytic Combinatorics. Cambridge University, 2009. ,
URL : https://hal.archives-ouvertes.fr/inria-00072739
RNA folding at elementary step resolution, RNA, vol.6, pp.325-338, 2000. ,
Rfam: Wikipedia, clans and the "decimal" release, Nucleic. Acids. Res, vol.39, pp.141-145, 2011. ,
Six degrees of separation: A play, 1990. ,
Modeling RNA folding paths with pseudoknots: application to hepatitis delta virus ribozyme, Proc. Natl. Acad. Sci. U.S.A, vol.97, issue.12, pp.6515-6520, 2000. ,
The large-scale organization of metabolic networks, Nature, vol.407, issue.6804, pp.651-654, 2000. ,
Asymptotics of RNA shapes, J. Comput. Biol, vol.15, issue.1, pp.31-63, 2008. ,
URL : https://hal.archives-ouvertes.fr/inria-00548861
Rfam 12.0: updates to the RNA families database, Nucleic Acids Res, 2014. ,
Random graphs with arbitrary degree distributions and their applications, Phys. Rev. E, vol.64, issue.2, p.26118, 2001. ,
DOI : 10.1515/9781400841356.269
URL : http://arxiv.org/pdf/cond-mat/0007235
Model calculations on the kinetics of oligonucleotide double-helix coil transitions: Evidence for a fast chain sliding reaction, Biophys Chem, vol.2, issue.2, pp.83-96, 1974. ,
Small-world networks and the conformation space of a short lattice polymer chain, Europhys. Lett, vol.55, issue.4, pp.594-600, 2001. ,
The yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple model, EMBO Rep, vol.5, issue.3, pp.280-284, 2004. ,
Collective dynamics of 'small-world' networks, Nature, vol.393, issue.6684, pp.440-442, 1998. ,
Small worlds in RNA structures, Nucleic. Acids. Res, vol.31, issue.3, pp.1108-1117, 2003. ,